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DRBUDDI

DR BUDDI exits

Submitted by marie_drottar@… on Wed, 08/21/2019 - 09:56
Category

After running DR BUDDI  with 

....AP_proc.list, .....PA_proc.list and T1.nii, a path to output folder, and a name for the new listfile

and using all other default parameters

I get this message....

"3 numbers have to be entered for final resolution....Exiting."

Can you explain what is happening here and how to fix this?

 

"Applying" results of DRBUDDI to full dataset

Submitted by randomwalkerdi… on Mon, 04/15/2019 - 11:06
Category

Hello!

New user to TORTOISE!

I have diffusion data with 7 up and 7 direction, and a full data set with 64 directions. I have been able to follow the steps till DRBUDDI stage; I have provided the 7 direction blip up data and the 7 direction blip down data. Once I have the results, how can I "apply" the results of distortion correction to my full data? Or do I need to run DRBUDDI with full data (blip up) and 7 directions blip down?


Apologies for the newbie questions.

 

 

Thank you!

Keep diffusing!

demo_step6_TensorFit.sh

Submitted by dtomasi on Thu, 03/28/2019 - 08:43
Category

Dear TORTOISE team

I got the following error when using demo_step6_TensorFit.sh for the first time:

~/TORTOISE_V3.1.3_AFNI_bootcamp_DATA_102218/scripts$ ./demo_step6_TensorFit.sh


EstimateTensorWLLS -i ../demo_DATA/5--step5_DRBUDDI_correction/dti_n_ap_DR_proc_DRBUDDI_proc/dti_n_ap_DR_proc_DRBUDDI_final.list -m ../demo_DATA/5--step5_DRBUDDI_correction/dti_n_ap_DR_proc_DRBUDDI_proc/mask_mask.nii.gz
ComputeDECMap ../demo_DATA/5--step5_DRBUDDI_correction/dti_n_ap_DR_proc_DRBUDDI_proc/dti_n_ap_DR_proc_DRBUDDI_final_L0_DT.nii

DRBUDDI error transformations were not found

Submitted by Chris Panks on Thu, 03/14/2019 - 14:29
Category

We're setting up a new study and updating our protocol to Tortoise 3. I'm having some trouble getting DRBUDDI to run successfully, using a subject that ran without problem on Tortoise 2.5. I have not been able to figure out the source of this error message that comes up when starting DRBUDDI:

 

"WARNING!! The transformations were not found for the up data. Is this intentional? DR BUDDI expects DIFFPREP to have been run previously..."