Header

Community

Add Forum Question

Forum

Category DIFFCALC

Tensor fitting with voxel-wise bmatrices
3
Definition of the parameter maps
DIFFCALC - Export Images - AFNI: killed
Differences between DIFFCALC V3.1.2 command line and DIFFCALC V2.5.1 GUI
Removing dropped out directions in Tortoise 3?
Additional options for EstimateTensorNLLSRESTORE?
How to visualize the tensor and the eigenvector
Robust tensor fitting
core dump with ComputeGlyphMaps
Tensors in DTITK format with TORTOISE_V3.1.4
What are the x,y,z coordinates for my DTI00000, DTI00001, DTI00002, DTI00003, DTI00004, and DTI00005?
Tortoise 3.1.4 EstimateTensorNLLSRESTORE - after DRBUDDI
Tortoise 3.1.4 EstimateTensorNLLSRESTORE

Category DIFFPREP

some questions about the output *_noise.nii after DIFFPREP
3
Using field mapping to correct distortions
Limit CPU usage of DIFF_PREP
Segmentation Fault ReorientImage
Diffprep: Segmentation Fault
SyN Registration Error
DIFFPREP oddities
bvec rotation
"Not all the mendatory tags present"
DIFFPREP- EPI DISTORTION CORRECTION
Outputs for processing in 3DSlicer
Can FLAIR image be used as structural image in DIFFPREP?
Warning message during registration process (solved 9/8/20)
Modified mec files
Missing motion graph in QC folder
Using T1 structural data
Misaligned Genu of Corpus Callosum in version 3.2
Can TORTOISE report head motion index?
Poor DTI to T2ACPC alignment
Segmentation Fault: 11
Motion estimate
Best EPI Distortion Correction?
SyN registration
Gradients scaling
re: rodent data
DWI NIFTI file does not exist... Exiting...
Environment Variables of DIFFPREP linux command
DIFFPREP error messages
Missing clusters after DIFFPREP
Optimal Tortoise 3.1.4 setting of <correction_mode>?
Empty *_epi_field.nii file after using DIFFPREP
Reorienting anatomical images

Category Installation

unable to get TORTOISE up and running on my Mac
installing software
Libstdc++ Error
error with ComputeGlyphMaps
ComputeDECMapNS

Category DRBUDDI

3
DR_BUDDI_withoutGUI issue
Problem with DR_BUDDI
The infinity value and changed shape of proc diffusion MRI
DR_BUDDI executables
xxx_proc_DRBUDDI_up_final.list does not exist
DR BUDDI exits
"Applying" results of DRBUDDI to full dataset
demo_step6_TensorFit.sh
DRBUDDI error transformations were not found

Category General discussion

dMRI Data Acquisitions
Calling TORTOISE modules from Python
Installing TORTOISE IN REDHAT 7
intensity histogram of b0 image after preprocessing
2020/21 course
Import* and Compute* commands exit codes not zero
ImportNifti -d -D options
Running TORTOISE through Matlab
Brain Parcellation Map Output?
Source code
Preclinical Imaging
Running ComputeGlyphMaps under Linux: error message 'Aborted'
Running Tortoise 3.1.2 under recent MacOS versions (High Sierra, Mojave)?
Welcome to TORTOISE forum

Category Import errors

Incorrect bmatrix calculation
what the coordinate system (magnet coordinate or the FOV coordinate) does ImportDICOM referring when importing diffusion dataset
ImportDICOM warnning
Import dwi.nii.gz errors
Siemens Import Errors
Problem with ImportDICOM
DTI Phillips data

Category DRTAMAS

Translation misalignment when using ApplyTransformationToTensor
Warning message during Creation of a population template
How to register a tensor to a scalar image