Welcome to TORTOISE documentation!


/sites/default/files/inline-images/tortoise/diffprep.png /sites/default/files/inline-images/tortoise/DRBUDDI.png /sites/default/files/inline-images/tortoise/tortoise_image.png

TORTOISE is comprised of the following tools:

  • DIFFPREP [1]- Distortion and motion correction module: Link text Command Line and Link text GUI
  • DR-BUDDI [2] - EPI distortion correction module, run after DIFFPREP processing and if 2 or 4 opposite phase encode direction data present
  • DIFFCALC [3]- Tensor fitting and post processing correction module

In its newest form, DIFFPREP and DR-BUDDI modules have been revived from TORTOISE 2.5.1 and repackaged. DIFFPREP is primarily used in importing raw images, performing motion+eddy and EPI distortion corrections, as well as reorientation to a template space (if provided). Importantly, DIFFPREP has now been re-designed to run fully in C++ and does not require an IDL license or VM (yay!)– it is even executable from the command line. Some of the new features incorporated into the new DIFFPREP (and few in common with DR-BUDDI are as follows):

  • Batch capability for import and processing the data
  • Raw images converted to NIFTI format
  • No IDL license requirement
  • Gibbs ringing artifact removal
  • Data denoising
  • Improved image-based EPI distortion algorithm
  • A detailed log of import and processing procedures


Please refer the change log that documents the features incorporated in the new versions of the software

  • TORTOISE version 3.1.3 Main Documentation
    - Please use this documentation as a reference for version v3.1.1 and v3.1.2 as all of the features are the same except for certain modifications listed in the change log.

    Coming soon! TORTOISE_version_3.1.4_documentation. Please refer to the change log for additional features have been added to this version.