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Outputs for processing in 3DSlicer

Submitted by Noraliza7 on
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Hi!
Do I understand correctly, that if I want to use TORTOISE for eddy correction before processing in 3D Slicer I need _DMC.nii output and my .bval and .bvec?

Submitted by irfanogl on Fri, 11/13/2020 - 13:30

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Yes that is correct.

You use the DMC.nii and the DMC.bvecs and DMC.bvals files.

 

However, bvecs/bvals files are not generated by default, only a Bmatrix (DMC.bmtxt) file is generated.

You can get the bvecs/bvals files can be obtained by running:

TORTOISEBMatrixToFSLBvecs DMC.bmtxt