Category DIFFPREP Hi! Do I understand correctly, that if I want to use TORTOISE for eddy correction before processing in 3D Slicer I need _DMC.nii output and my .bval and .bvec? TORTOISE and Slicer Yes that is correct. You use the DMC.nii and the DMC.bvecs and DMC.bvals files. However, bvecs/bvals files are not generated by default, only a Bmatrix (DMC.bmtxt) file is generated. You can get the bvecs/bvals files can be obtained by running: TORTOISEBMatrixToFSLBvecs DMC.bmtxt Log in or register to post comments Log in or register to post comments
TORTOISE and Slicer Yes that is correct. You use the DMC.nii and the DMC.bvecs and DMC.bvals files. However, bvecs/bvals files are not generated by default, only a Bmatrix (DMC.bmtxt) file is generated. You can get the bvecs/bvals files can be obtained by running: TORTOISEBMatrixToFSLBvecs DMC.bmtxt Log in or register to post comments
Yes that is correct.
You use the DMC.nii and the DMC.bvecs and DMC.bvals files.
However, bvecs/bvals files are not generated by default, only a Bmatrix (DMC.bmtxt) file is generated.
You can get the bvecs/bvals files can be obtained by running:
TORTOISEBMatrixToFSLBvecs DMC.bmtxt