I am trying to run ReorientImage and am receiving the error "segmentation fault". I am able to import the data (ImportNIFTI), estimate tensors (EstimateTensorWLLS), and compute a DEC map (ComputeDECMap). From this, I see that the image needs to be reoriented. But when I try to run ReorientImage on the "raw" .list file created after the import, I get the seg fault error. I have tried this on both a Mac (OS 11.5) and on Linux (Ubuntu 20.04). I don't receive any other information from the error so I am not sure what other information may be useful. Any idea why I might be getting this error?
Thanks for your time
Bug in ReorientImage
Actually there was a bug in the REorientImage, which is fixed on our end.
Unfortunately, because we have not released a new version yet, the fixed version did not go into the hands of the users yet.
Just send me an email and I will get that to you.
Usually the segmentation fault occurs when there is a syntax error. Are you providing the original image orientation with the -r tag?