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Empty *_epi_field.nii file after using DIFFPREP

Submitted by jmollink on Mon, 10/15/2018 - 10:50
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Hi Tortoise community,

 

After applying DIFFPREP to process ex-vivo tissue blocks, my final EPI corrected diffusion images should be stored in the EPI_field.nii. While the file is created, it contents remain empty.. I don't get any error messages in my terminal. Any ideas? Possibly the pipeline is a bit different when using non whole-brain data?

 

Cheers,

Jeroen